Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1831
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.6
nitrogen source	Urea (N); with MOPS	-0.6
nitrogen source	D-2-Aminobutyric (N)	-0.6
temperature shift	Temperature shift 10_to_25; with MOPS	-0.5
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.5
temperature	Growth at 25C	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.5
r2a control	R2A control	-0.5
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.5
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-0.5
stress	R2A with Fusaric 240 ug/mL	-0.5
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.5
temperature shift	Temperature shift 10_to_30; with MOPS	-0.5
stress	R2A with Fusaric 480 ug/mL	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.4
carbon source	acetate (C)	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4
nitrogen source	2,6-diaminopimelic (N)	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.4
nitrogen source	NAG (N); with MOPS	+0.5
carbon source	carbon source D-Glucose 55.5 mM	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
no phage control	No phage control	+0.5
phage	P. putida Sci small MOI 0.1	+0.6
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