Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1827
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	-2.0
nitrogen source	Propandiamine (N)	-1.7
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	-1.7
phage	P. putida Sci small MOI 0.1	-1.3
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.8
nitrogen source	Propandiamine (N)	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.8
nitrogen source	Hydantoin (N)	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.8
carbon source	L-Lysine 10 mM (C)	-0.7
phage	P. putida South MOI 10	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.7
temperature	Growth at 30C; with MOPS	+0.7
carbon source	L-Histidine (C)	+0.7
temperature shift	Temperature shift 30_to_21; with MOPS	+0.8
nitrogen source	nitrogen source nitrite 0.5mM	+0.8
nitrogen source	D-2-Aminobutyric (N)	+0.8
stress	R2A with Fusaric 480 ug/mL	+0.9
carbon source	L-Leucine (C)	+1.1
nitrogen source	DL-2-Aminobutyric (N)	+1.1
nitrogen source	DL-2-Aminobutyric (N)	+1.5
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