Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1813
nitrogen source	Urea (N); with MOPS	-2.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-1.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.5
pH	Growth at pH9 and (C) Trisodium citrate	-1.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	-1.3
carbon source	L-Lysine (C)	-1.2
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	-1.2
phage	P. putida PUT10 MOI 0.1	-1.1
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM	-1.0
carbon source	butyrate (C)	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9
phage	PUT8 MOI 0.1	-0.9
carbon source	Heptanoic (C)	-0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.8
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.8
nitrogen source	NAG (N)	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.8
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.8
pH	Growth at pH6 and (C) Trisodium citrate	+0.8
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.8
pH	Growth at pH7 and (C) D-Glucose	+0.9
temperature	Growth at 30C; with MOPS	+0.9
temperature shift	Temperature shift 30_to_25	+0.9
carbon source	carbon source Bisabolol 45 mM	+0.9
no stress control	Growth with no stress	+1.0
carbon source	D-Glucose (C)	+1.0
pH	pH 6	+1.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.2
		remove PP_1813