Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1748
phage	P. putida Missley MOI 0.1	-1.6
nitrogen source	nitrogen source nitrite 1mM	-1.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.2
phage	P. putida Sci Big MOI 0.1	-1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.2
pH	Growth at pH7 and (C) D-Glucose	-1.1
carbon source	Valerolactone (C)	-1.1
phage	PUT8 MOI 0.1	-1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0
nitrogen source	Ammonium chloride (N)	-1.0
nitrogen source	NAG (N); with MOPS	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9
phage	P. put South MOI 10	-0.9
stress	Growth with Chloride 200 mM	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.8
phage	P. putida South MOI 1	-0.8
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-0.8
nitrogen source	nitrate (N)	-0.8
carbon source	L-Phenylalanine 5 mM (C)	-0.8
carbon source	D-Fructose (C)	-0.7
nitrogen source	no extra (N); with MOPS	-0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7
nitrogen source	nitrite (N)	-0.7
pH	Growth at pH9 and (C) Trisodium citrate	-0.7
carbon source	Delta-Nonalactone (C)	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6
temperature shift	Temperature shift 30_to_25; with MOPS	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.7
nitrogen source	Ammonium chloride (N)	+0.9
nitrogen source	2,6-diaminopimelic (N)	+1.0
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