Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_1700
phage P. putida PUT 7 MOI 1 -0.4
pH Valerolactone (C) pH 6.5 -0.4
phage P. putida Missley MOI 0.1 -0.3
supernatant Supernatant; Paenibacillus sp. UNCCL52 spent media 0.5x -0.3
temperature shift Temperature shift 30_to_25; with MOPS -0.3
phage P. putida Sci small MOI 0.1 -0.3
carbon source L-Lysine (C) -0.3
temperature Growth at 25C -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3
nitrogen source D-2-Aminobutyric (N) -0.3
carbon source 4-Methyl-2-oxopentanoic (C) -0.3
carbon source Valeric (C) -0.3
temperature shift Temperature shift 30_to_25 +0.2
pH Growth at pH7 and (C) Trisodium citrate +0.3
nitrogen source 2,6-diaminopimelic (N) +0.3
carbon source Valerolactone (C) +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3
phage PUT8 MOI 0.1 +0.3
phage PUT8 MOI 0.1 +0.3
stress R2A with Fusaric 480 ug/mL +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3
stress R2A with Fusaric 120 ug/mL +0.3
temperature shift Temperature shift 10_to_30; with MOPS +0.3
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. +0.3
nitrogen source Urea (N) +0.3
temperature shift Temperature shift 30_to_34; with MOPS +0.3
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.4
stress R2A with Fusaric 480 ug/mL +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4
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PP_1700