Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1697
nitrogen source	D-2-Aminobutyric (N)	-3.3
nitrogen source	D-2-Aminobutyric (N)	-3.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.8
pH	Growth at pH7 and (C) Trisodium citrate	-2.4
carbon source	ferulate (C); with MOPS	-2.2
carbon source	Rhamnogalacturonan - from potato (C)	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.6
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.5
temperature shift	Temperature shift 30_to_21; with MOPS	-1.4
temperature shift	Temperature shift 10_to_25; with MOPS	-1.4
nitrogen source	nitrate (N)	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.4
nitrogen source	Imidazole (N)	-1.3
pH	Growth at pH9 and (C) Trisodium citrate	-1.3
phage	P. putida Sci small MOI 0.1	-1.3
phage	P. putida PUT10 MOI 1	-1.3
no stress control	Growth with no stress	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.2
carbon source	Glucose (C) (20mM)	-1.1
carbon source	D-Glucose (C) 2.5 mM	-1.1
nitrogen source	DL-3-Aminoisobutyric (N)	-1.1
carbon source	Valerolactone (C)	-1.0
nitrogen source	nitrite (N)	-1.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	-1.0
pH	Growth at pH6 and (C) D-Glucose	+1.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.1
phage	P. putida Sci small MOI 0.1	+1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.6
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