Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_1684
nitrogen source NAG (N); with MOPS -0.9
nitrogen source nitrate (N) -0.8
temperature shift Temperature shift 10_to_25; with MOPS -0.8
carbon source Valerolactone (C) -0.6
nitrogen source 2,6-diaminopimelic (N) -0.6
nitrogen source D-2-Aminobutyric (N) -0.6
carbon source Myristic (C) -0.6
pH Growth at pH6 and (C) D-Glucose -0.6
phage P. putida Sci small MOI 0.1 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5
phage P. put South MOI 0.1 -0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5
nitrogen source Propandiamine (N) -0.4
phage P. putida South MOI 1 -0.4
nitrogen source Ammonium chloride and TNT (N) +0.4
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.5
pH pH 9 +0.5
carbon source L-Alanine (C) +0.5
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +0.5
temperature shift Temperature shift 10_to_25; with MOPS +0.5
carbon source carbon source Glycerol 108.6 mM +0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.5
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM +0.6
nitrogen source nitrate (N) +0.6
pH pH 8 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.7
pH pH 4 +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.7
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PP_1684