Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_1667
phage P. putida Sci small MOI 0.1 -0.9
nitrogen source Urea (N) -0.9
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.8
carbon source Valeric (C) -0.7
carbon source ferulate (C); with MOPS -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.6
pH Growth at pH6 and (C) D-Glucose -0.6
carbon source D-Glucose (C) with 20AA_mix_minus_Cys -0.6
carbon source ferulate (C); with MOPS -0.5
carbon source L-Lysine (C) -0.5
pH Valerolactone (C) pH 6.5 -0.5
nitrogen source Ammonium chloride (N); with MOPS -0.5
carbon source L-Glutamic (C) -0.5
temperature shift Temperature shift 30_to_25 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.5
pH Growth at pH7 and (C) D-Glucose -0.4
pH Growth at pH7 and (C) Trisodium citrate -0.4
carbon source D-Glucose (C) with 20AA_mix_minus_Tyr -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4
carbon source 5-Hydroxydodecanoate (C) +0.4
carbon source carbon source 3-O-methyl-glucose 50 mM +0.4
carbon source Tween 20 (C) +0.4
nitrogen source NAG (N); with MOPS +0.4
phage PUT8 MOI 0.1 +0.5
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.5
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.5
pH Growth at pH8 and (C) D-Glucose +0.5
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6
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PP_1667