Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1628
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-1.7
carbon source	1,4-Butanediol (C)	-1.6
nitrogen source	Propandiamine (N)	-1.4
pH	Growth at pH7 and (C) Trisodium citrate	-1.4
nitrogen source	Propandiamine (N)	-1.4
carbon source	1,4-Butanediol (C)	-1.1
carbon source	Delta-Nonalactone (C)	-1.1
carbon source	3-Hydroxyhexanoic (C)	-1.1
carbon source	5-Aminovaleric 10 mM (C)	-1.0
carbon source	3-Hydroxyhexanoic (C)	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.9
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8
carbon source	Oleic (C)	-0.8
stress	R2A with Fusaric 480 ug/mL	-0.7
nitrogen source	2,6-diaminopimelic (N)	+0.7
temperature shift	Temperature shift 10_to_25	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8
temperature shift	Temperature shift 10_to_25; with MOPS	+0.8
pH	pH 9	+0.8
carbon source	D-Glucose (C)	+0.8
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.8
pH	pH 6	+0.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.9
nitrogen source	DL-2-Aminobutyric (N)	+0.9
nitrogen source	DL-2-Aminobutyric (N)	+1.0
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.0
nitrogen source	D-2-Aminobutyric (N)	+1.1
carbon source	carbon source 4-vinylphenol 0.01 mM	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.3
		remove PP_1628