Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_1620
nitrogen source L-Phenylalanine (N) -2.0
nitrogen source L-Phenylalanine (N) -1.8
carbon source ferulate (C); with MOPS -1.2
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM -1.0
carbon source 2,3-Butanediol (C) -1.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM -0.9
carbon source 4-Hydroxyvalerate (C) (40mM) -0.9
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9
phage P. putida Sci Big MOI 0.1 -0.8
carbon source Levulinic Acid (C) -0.8
nitrogen source nitrate (N) -0.8
dilutelb LB 0.1x with 55.5 mM D-Glucose -0.8
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM -0.8
carbon source ferulate (C); with MOPS -0.8
nitrogen source Urea (N) -0.8
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.8
carbon source 2-Methylbutanoic (C) -0.7
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -0.7
carbon source 4-Hydroxyvalerate (C) (40mM) -0.7
dilutelb LB 0.1x with 55.5 mM D-Glucose -0.7
carbon source Vanillin (C) -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -0.6
carbon source Myristic (C) -0.6
pH Valerolactone (C) pH 6.5 -0.6
phage P. putida Sci small MOI 0.1 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.7
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.8
micoeukaryotes C.elegans, mixed culture-2 +0.8
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PP_1620