Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1541
temperature shift	Temperature shift 10_to_25; with MOPS	-1.0
nitrogen source	nitrate (N)	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.6
carbon source	acetate (C)	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5
temperature shift	Temperature shift 30_to_25; with MOPS	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
carbon source	L-Leucine (C)	-0.5
pH	Growth at pH8 and (C) D-Glucose	-0.5
carbon source	L-Lysine 10 mM (C)	-0.5
stress	Formaldehyde 0.03125 vol%	-0.5
temperature shift	Temperature shift 30_to_25; with MOPS	-0.5
pH	Growth at pH9 and (C) D-Glucose	-0.5
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.5
pH	Growth at pH7 and (C) Trisodium citrate	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
nitrogen source	nitrogen source nitrite 0.5mM	+0.5
pH	pH 8	+0.6
carbon source	1,3-Butandiol (C)	+0.6
carbon source	L-Lysine (C)	+0.6
nitrogen source	nitrogen source Ammonium chloride 20mM	+0.6
micoeukaryotes	C.elegans, mixed culture-2	+0.6
carbon source	ferulate (C); with MOPS	+0.8
phage	P. putida Sci Big MOI 0.1	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.2
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