Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1413
temperature shift	Temperature shift 30_to_21; with MOPS	-0.8
phage	P. putida Sci small MOI 0.1	-0.7
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-0.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	-0.6
phage	P. putida Missley MOI 0.1	-0.6
temperature shift	Temperature shift 10_to_30; with MOPS	-0.6
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	-0.6
temperature shift	Temperature shift 30_to_4	-0.6
dilutelb	LB 0.1x with 55.5 mM D-Glucose	-0.6
phage	P. putida South MOI 0.1	-0.5
pH	Growth at pH6 and (C) Trisodium citrate	-0.5
phage	P. putida South MOI 10	-0.5
carbon source	L-tyrosine 5 mM (C)	-0.5
carbon source	3-Hydroxydecanoic (C)	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.6
pH	pH 6	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6
carbon source	L-Lysine (C)	+0.7
carbon source	Delta-Nonalactone (C)	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.7
carbon source	Nonanoic (C)	+0.7
stress	Isobutyl alcohol 0.6 vol%	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0
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