Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1412
nitrogen source	NAG (N); with MOPS	-0.9
carbon source	Valeric (C)	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.6
carbon source	D-Glucose (C)	-0.5
stress	Growth with Chloride 200 mM; with MOPS	-0.5
stress	R2A with Fusaric 240 ug/mL	-0.5
pH	Growth at pH8 and (C) D-Glucose	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
phage	P. putida PUT10 MOI 1	-0.4
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.4
phage	PUT8 MOI 10	-0.4
carbon source	ferulate (C); with MOPS	-0.4
nitrogen source	2,6-diaminopimelic (N)	-0.4
carbon source	p-Coumaric (C)	-0.4
carbon source	L-Proline (C)	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.4
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	+0.4
carbon source	L-Leucine (C)	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4
carbon source	carbon source Glycerol 108.6 mM	+0.5
stress	R2A with Fusaric 480 ug/mL	+0.5
pH	Growth at pH7 and (C) D-Glucose	+0.5
pH	Growth at pH6 and (C) D-Glucose	+0.5
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.9
		remove PP_1412