Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_1389
carbon source carbon source 3-O-methyl-glucose 50 mM -1.1
no phage control Time6-nophage -1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.0
pH Growth at pH6 and (C) D-Glucose -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.8
temperature Growth at 30C; with MOPS -0.7
no phage control Time6-nophage -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.7
phage moi 100 Time6-phageFRS -0.7
phage P. putida Sci small MOI 0.1 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7
phagefrs Time6-FRS -0.7
phage P. put South MOI 10 -0.6
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.6
lb LB -0.6
no phage control Time6-nophage -0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.5
stress pinene 10 vol% +0.5
carbon source Myristic (C) +0.5
carbon source 5-Aminovaleric 10 mM (C) +0.5
phage PUT8 MOI 10 +0.5
nitrogen source nitrogen source nitrite 0.5mM +0.6
carbon source Crotonic (C) +0.6
no stress control Growth with no stress +0.7
phage PUT8 MOI 0.1 +0.9
phage PUT 8 MOI 1 +0.9
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PP_1389