Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1383
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5
carbon source	ferulate (C); with MOPS	-0.5
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.4
stress	R2A with Fusaric 480 ug/mL	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.3
carbon source	propionate (C)	-0.3
phage	P. put South MOI 1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3
stress	Butanol 0.6 vol%	+0.3
carbon source	4-Aminobutyric 10 mM (C)	+0.3
carbon source	Rhamnogalacturonan - from potato (C)	+0.4
phage	P. put South MOI 0.1	+0.4
phage	PUT8 MOI 10	+0.4
phage	P. putida South MOI 1	+0.4
nitrogen source	nitrogen source nitrite 0.5mM	+0.4
phage	PUT8 MOI 0.1	+0.4
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	+0.4
temperature shift	Temperature shift 30_to_10; with MOPS	+0.4
phage	P. putida South MOI 0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4
temperature	Growth at 25C; with MOPS	+0.4
temperature shift	Temperature shift 10_to_25; with MOPS	+0.4
pH	Growth at pH7 and (C) Trisodium citrate	+0.4
carbon source	ferulate (C); with MOPS	+0.4
carbon source	Vanillic Acid (C)	+0.5
phage	P. putida PUT10 MOI 10	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
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