Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_1328
carbon source Delta-Decalactone (C) -6.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -6.0
carbon source Delta-Nonalactone (C) -5.2
carbon source 4-Hydroxyvalerate (C) (40mM) -5.1
carbon source 1,3-Hexanediol (C) -4.9
stress R2A with Fusaric 240 ug/mL -4.4
carbon source Delta-Decalactone (C) -4.3
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -4.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -4.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -4.0
carbon source Valeric (C) -3.7
carbon source 4-Hydroxyvalerate (C) (40mM) -3.7
nitrogen source 6-aminocaproic (N) -3.6
carbon source Delta-Undecalactone (C) -3.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.5
carbon source 1,3-Butandiol (C) -3.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.3
nitrogen source Ammonium chloride (N) -3.2
pH Valerolactone (C) pH 6.5 -3.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -3.2
carbon source 1,4-Butanediol (C) -3.2
carbon source L-Leucine (C) -3.2
carbon source Hexanoic (C) -3.1
carbon source 3-methyl-3-buten-1-ol 0.25 vol% (C) -3.1
carbon source 1,3-Hexanediol (C) -2.9
carbon source Delta-Undecalactone (C) -2.8
carbon source Valerolactone (C) -2.8
carbon source carbon source 2-Deoxy-D-glucose 100 mM -2.7
carbon source Octanoic (C) -2.7
nitrogen source 2,6-diaminopimelic (N) -2.5
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PP_1328