Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_1300
nitrogen source L-Lysine (N) -2.4
nitrogen source L-Lysine (N) -2.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.5
nitrogen source D-Lysine (N) -1.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.2
nitrogen source L-Ornithine (N) -1.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.2
nitrogen source L-Ornithine (N) -1.2
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -1.1
carbon source Tween 20 (C) -1.1
nitrogen source D-Lysine (N) -1.1
carbon source L-Lysine (C) -1.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9
carbon source L-Lysine 10 mM (C) -0.9
carbon source L-Phenylalanine 5 mM (C) -0.9
nitrogen source L-Isoleucine (N) -0.9
carbon source D-Lysine 10 mM (C) -0.9
phage P. putida Sci Big MOI 0.1 -0.9
carbon source Sebacic (C) -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.9
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM -0.8
carbon source carbon source 3-O-methyl-glucose 50 mM -0.8
nitrogen source L-Isoleucine (N) -0.8
nitrogen source nitrate (N) +0.8
pH Growth at pH6 and (C) Trisodium citrate +0.9
temperature shift Temperature shift 10_to_30; with MOPS +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +1.0
temperature shift Temperature shift 30_to_25; with MOPS +1.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.1
carbon source Valerolactone (C) +1.4
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PP_1300