Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_1295
carbon source 3-methyl-2-oxopentanoic (C) -0.7
carbon source 3-methyl-2-oxopentanoic (C) -0.7
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -0.7
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.7
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.6
nitrogen source nitrogen source nitrite 0.5mM -0.6
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.6
phage P. putida South MOI 1 -0.6
nitrogen source NAG (N); with MOPS -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.6
carbon source DL-3-Hydroxybutyric (C) -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5
pH Growth at pH8 and (C) Trisodium citrate -0.5
phage P. put South MOI 1 -0.5
phage P. putida PUT10 MOI 0.1 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5
nitrogen source Propiolactam (N) -0.5
nitrogen source D-2-Aminobutyric (N) -0.5
nitrogen source Propiolactam (N) -0.5
stress MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL -0.5
carbon source 1,3-Butandiol (C) -0.5
phage P. putida PUT10 MOI 0.1 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5
carbon source L-Leucine (C) +0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.5
carbon source DL-2-Aminoadipic 10 mM (C) +0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +1.1
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PP_1295