Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1277
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.4
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.4
temperature shift	Temperature shift 30_to_25	-0.4
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3
temperature shift	Temperature shift 10_to_25; with MOPS	-0.3
temperature shift	Temperature shift 30_to_21; with MOPS	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.3
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.3
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.3
carbon source	L-Leucine (C)	+0.3
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	+0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-1	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.3
carbon source	4-Aminobutyric 10 mM (C)	+0.3
stress	3-methyl-1-butanol 0.4 vol%	+0.3
nitrogen source	nitrogen source Ammonium chloride 20mM	+0.3
pH	Growth at pH6 and (C) D-Glucose	+0.4
nitrogen source	Urea (N); with MOPS	+0.4
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.4
nitrogen source	Urea (N)	+0.4
nitrogen source	NAG (N); with MOPS	+0.4
pH	Growth at pH8 and (C) D-Glucose	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7
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