Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1261
nitrogen source	NAG (N); with MOPS	-2.4
pH	Growth at pH9 and (C) Trisodium citrate	-1.9
carbon source	Trisodium citrate (C)	-1.6
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.4
nitrogen source	2,6-diaminopimelic (N)	-1.4
pH	Growth at pH8 and (C) D-Glucose	-1.3
temperature shift	Temperature shift 10_to_25	-1.1
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-1.0
time series	Timeseries; NC condition; Bioreplicate 1; Time 5hrs; Measurement	-1.0
carbon source	L-Leucine (C)	-1.0
carbon source	2,3-Butanediol (C)	-1.0
temperature shift	Temperature shift 30_to_25	-1.0
pH	Growth at pH8 and (C) Trisodium citrate	-0.9
nitrogen source	no extra (N)	-0.9
stress	Growth with Chloride 200 mM	-0.9
carbon source	Glucose (C) (20mM)	-0.9
nitrogen source	Carnitine Hydrochloride (N)	-0.9
phage	P. putida Sci Big MOI 0.1	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.9
time series	Timeseries; MAX condition; Bioreplicate 1; Time 4hrs; Measurement	+0.9
carbon source	D-Glucose (C) with 20AA_mix_minus_Gln	+0.9
nitrogen source	nitrogen source nitrite 0.5mM	+0.9
carbon source	Tween 20 (C)	+0.9
stress	R2A with Fusaric 480 ug/mL	+0.9
carbon source	D-Glucose (C) with 20AA_mix_minus_Asn	+0.9
pH	D-Glucose (C) pH 6	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+1.2
		remove PP_1261