Fitness for 1 genes in Pseudomonas putida KT2440

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Top 30 experiments (either direction), sorted by average fitness

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Group Condition PP_1257
carbon source Hydroxy-L-Proline (C) -7.9
carbon source Hydroxy-L-Proline (C) -7.2
pH pH 6 -0.9
phage P. putida South MOI 10 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7
carbon source Trisodium citrate (C) -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay -0.5
temperature shift Temperature shift 10_to_25; with MOPS -0.5
phage P. putida Sci small MOI 0.1 -0.5
temperature shift Temperature shift 30_to_25; with MOPS -0.5
carbon source D-Glucose (C) -0.5
nitrogen source nitrogen source nitrite 0.5mM -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4
carbon source 3-methyl-1-butanol 0.25 vol% (C) -0.4
pH Growth at pH8 and (C) D-Glucose -0.4
nitrogen source Propiolactam (N) -0.4
stress Growth with Chloride 200 mM; with MOPS -0.4
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM -0.4
temperature shift Temperature shift 10_to_30; with MOPS -0.4
phage P. put PUT 10 MOI 1 -0.4
temperature shift Temperature shift 30_to_25 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4
pH Growth at pH7 and (C) Trisodium citrate +0.4
nitrogen source 2,6-diaminopimelic (N) +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.5
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.6
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PP_1257