Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1256
carbon source	Hydroxy-L-Proline (C)	-6.4
carbon source	Hydroxy-L-Proline (C)	-5.5
temperature shift	Temperature shift 30_to_21; with MOPS	-1.2
nitrogen source	NAG (N); with MOPS	-1.1
carbon source	ferulate (C); with MOPS	-1.0
pH	Growth at pH6 and (C) Trisodium citrate	-0.9
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.9
temperature shift	Temperature shift 30_to_21; with MOPS	-0.8
carbon source	DL-3-Hydroxybutyric (C)	-0.8
stress	Growth with Chloride 500 mM; with MOPS	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7
carbon source	3-Hydroxydecanoic (C)	-0.7
nitrogen source	NAG (N); with MOPS	-0.7
pH	Growth at pH6 and (C) D-Glucose	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.7
temperature	Growth at 30C	-0.7
temperature shift	Temperature shift 10_to_30	-0.7
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-0.7
carbon source	Rhamnogalacturonan - from potato (C)	-0.6
temperature shift	Temperature shift 30_to_25	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM	-0.6
phage	P. putida South MOI 10	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.6
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.9
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