Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_1217
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -4.0
nitrogen source nitrogen source Ammonium chloride 20mM -3.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -3.3
stress R2A with Fusaric 480 ug/mL -3.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.1
stress Growth with Chloride 500 mM; with MOPS -3.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -3.0
nitrogen source DL-2-Aminobutyric (N) -2.9
carbon source 3-methyl-1-butanol (C) -2.9
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.9
carbon source 3-methyl-1-butanol 0.25 vol% (C) -2.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -2.8
carbon source ferulate (C); with MOPS -2.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -2.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.7
nitrogen source nitrite (N) -2.7
nitrogen source D-Lysine (N) -2.7
carbon source 3-methyl-1-butanol 0.1 vol% (C) -2.6
stress R2A with Fusaric 480 ug/mL -2.6
carbon source Delta-Undecalactone (C) -2.6
nitrogen source L-Cysteine (N) -2.6
carbon source 1,5-Pentanediol (C) -2.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.5
nitrogen source DL-2-Aminobutyric (N) -2.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.5
nitrogen source 5-Aminovaleric (N) -2.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.5
nitrogen source L-Serine (N) -2.5
carbon source 1,4-Butanediol (C) -2.5
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. +2.6
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PP_1217