Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_1106
pH pH 7 -0.7
pH pH 6 -0.7
r2a control R2A control -0.7
carbon source carbon source 4-vinylphenol 0.1 mM -0.7
carbon source Tween 20 (C) -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6
carbon source carbon source D-Glucose 55.5 mM -0.6
microaerobic m9 microaerobic M9 -0.6
pH pH 9 -0.6
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -0.6
pH pH 5 -0.6
pH pH 8 -0.5
carbon source carbon source 3-O-methyl-glucose 10 mM -0.5
nitrogen source nitrogen source nitrite 0.5mM -0.5
carbon source 1,3-Butandiol (C) -0.5
temperature shift Temperature shift 30_to_25 -0.5
phage P. putida South MOI 1 -0.4
carbon source 4-Aminobutyric 10 mM (C) -0.4
pH pH 4 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.5
nitrogen source NAG (N); with MOPS +0.5
pH Valerolactone (C) pH 6.5 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.6
nitrogen source Urea (N); with MOPS +0.6
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PP_1106