Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_1105
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5
phage	P. put South MOI 10	-0.4
carbon source	3-Hydroxydecanoic (C)	-0.4
temperature	Growth at 30C; with MOPS	-0.4
nitrogen source	D-2-Aminobutyric (N)	-0.4
nitrogen source	2,6-diaminopimelic (N)	-0.4
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.3
nitrogen source	nitrogen source nitrite 1mM	-0.3
phage	PUT8 MOI 0.1	-0.3
carbon source	Heptanoic (C)	-0.3
carbon source	3-Hydroxydecanoic (C)	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3
phage	PUT8 MOI 0.1	-0.3
phage moi 100	Time6-phageFRS	-0.3
nitrogen source	2,6-diaminopimelic (N)	-0.3
carbon source	Oleic (C)	-0.3
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	+0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3
phage moi 100	Time6-phageFRS	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
carbon source	Lignin Monomers (C)	+0.4
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.4
carbon source	carbon source Glycerol 108.6 mM	+0.4
temperature shift	Temperature shift 30_to_25	+0.4
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	+0.4
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