Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_1078
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.8
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.0
stress R2A with Fusaric 480 ug/mL -1.5
stress R2A with Fusaric 480 ug/mL -1.5
stress 2-Ethylhexanol 0.4 vol% -1.4
stress R2A with Fusaric 480 ug/mL -1.4
stress Cholinium dihydrogen phosphate 10 vol% -1.4
stress R2A with Fusaric 480 ug/mL -1.2
stress R2A with Fusaric 480 ug/mL -1.1
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -1.0
stress 2-Piperidinone 3 vol% -0.9
stress R2A with Fusaric 480 ug/mL -0.9
stress 3-methyl-1-butanol 0.4 vol% -0.9
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.9
carbon source Delta-Dodecalactone (C) -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8
phage P. putida PUT 7 MOI 1 -0.8
nitrogen source Propandiamine (N) -0.8
carbon source ferulate (C); with MOPS -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7
carbon source carbon source 2-Deoxy-D-glucose 10 mM -0.7
carbon source M9 minimal media_noCarbon with Trisodium citrate 10 mM; 30C; then outgrowth in LB -0.7
carbon source L-Leucine (C) +0.8
carbon source 3-methyl-1-butanol 0.1 vol% (C) +1.0
carbon source DL-2-Aminoadipic 10 mM (C) +1.0
stress pinene 10 vol% +1.0
carbon source 3-methyl-1-butanol (C) +1.0
carbon source 3-methyl-1-butanol (C) +1.4
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PP_1078