Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_1070
carbon source L-Glutamic (C) -4.6
carbon source L-Glutamine (C) -2.3
carbon source L-Glutamic (C) -2.0
phage P. putida PUT 7 MOI 1 -1.6
phage P. putida Sci Big MOI 0.1 -1.5
carbon source L-Glutamic (C) -1.4
carbon source Delta-Decalactone (C) -1.4
phage P. putida Missley MOI 0.1 -1.1
carbon source L-Leucine (C) -0.9
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8
phage P. putida Sci small MOI 0.1 -0.7
nitrogen source Propiolactam (N) -0.6
carbon source 4-Hydroxyvalerate (C) (40mM) -0.6
carbon source D-Glucose (C) with 20AA_mix_minus_Cys +0.6
stress R2A with Fusaric 240 ug/mL +0.6
carbon source ferulate (C); with MOPS +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.6
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6
nitrogen source nitrate (N) +0.7
temperature shift Temperature shift 30_to_10 +0.7
phage moi 100 Time6-phageFRS +0.7
carbon source D-Glucose (C); with MOPS +0.7
nitrogen source D-2-Aminobutyric (N) +0.7
nitrogen source Ammonium chloride (N) +0.8
pH Growth at pH7 and (C) D-Glucose +0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3
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PP_1070