Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1034
stress	R2A with Fusaric 480 ug/mL	-2.8
stress	R2A with Fusaric 480 ug/mL	-2.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-2.5
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-2.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-2.2
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-2.0
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-2.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.9
stress	R2A with Fusaric 480 ug/mL	-1.8
carbon source	M9 minimal media_noCarbon with Trisodium citrate 10 mM; 30C; then outgrowth in LB	-1.8
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-1.8
stress	R2A with Fusaric 480 ug/mL	-1.8
stress	R2A with Fusaric 480 ug/mL	-1.7
stress	R2A with Fusaric 480 ug/mL	-1.7
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	-1.7
carbon source	M9 minimal media_noCarbon with Trisodium citrate 10 mM; 30C; then outgrowth in LB	-1.7
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.5
carbon source	M9 minimal media_noCarbon with Trisodium citrate 10 mM; 30C	-1.4
carbon source	M9 minimal media_noCarbon with Trisodium citrate 10 mM; 30C	-1.3
reactor_pregrowth	Adaptation in M9 media timecourse 3; day 3	-1.3
carbon source	Vanillin (C)	-1.2
carbon source	3-methyl-1-butanol (C)	-1.2
reactor_pregrowth	Adaptation in M9 media timecourse 1; day 2	-1.1
nitrogen source	Ammonium chloride and TNT (N)	-1.1
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-1.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-1.0
carbon source	M9 minimal media_noCarbon with D-Glucose 10 mM; 15C	-1.0
carbon source	M9 minimal media_noCarbon with D-Glucose 10 mM; 15C	-1.0
nitrogen source	Ammonium chloride and TNT (N)	-1.0
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