Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_0969
phage P. putida Missley MOI 0.1 -0.9
pH Growth at pH7 and (C) D-Glucose -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.7
phage P. putida Sci small MOI 0.1 -0.6
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.5
stress R2A with Polymyxin B sulfate 0.001 mg/ml -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.4
carbon source D-Glucose (C) 2.5 mM -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4
temperature shift Temperature shift 30_to_25 +0.4
carbon source L-Lysine (C) +0.4
carbon source 1,3-Butandiol (C) +0.4
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM +0.4
temperature shift Temperature shift 10_to_34; with MOPS +0.4
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM +0.4
phage P. put South MOI 0.1 +0.4
nitrogen source nitrate (N) +0.4
carbon source carbon source 4-vinylphenol 0.1 mM +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5
stress Growth with Chloride 500 mM +0.5
carbon source carbon source 3-O-methyl-glucose 50 mM +0.5
temperature shift Temperature shift 30_to_25; with MOPS +0.5
phage P. putida Sci Big MOI 0.1 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5
temperature shift Temperature shift 10_to_25; with MOPS +0.6
temperature shift Temperature shift 30_to_25 +0.6
stress Growth with Chloride 500 mM; with MOPS +0.6
pH pH 5 +0.6
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PP_0969