Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_0925
carbon source 4-Aminobutyric 10 mM (C) -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.1
nitrogen source Urea (N) -0.9
phage PUT8 MOI 0.1 -0.9
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9
temperature shift Temperature shift 10_to_25; with MOPS -0.9
stress R2A with Fusaric 120 ug/mL -0.8
carbon source Valeric (C) -0.8
phage P. put PUT 10 MOI 10 -0.8
phage P. putida South MOI 10 -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7
nitrogen source nitrogen source nitrite 1mM +0.6
phage P. putida Sci small MOI 0.1 +0.6
nitrogen source nitrogen source nitrate 20mM +0.7
phage P. putida South MOI 10 +0.7
pH D-Glucose (C) pH 6.5 +0.7
stress Growth with Chloride 500 mM; with MOPS +0.7
nitrogen source nitrogen source Ammonium chloride 20mM +0.7
carbon source Nonanoic (C) +0.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7
carbon source 2-Methylbutanoic (C) +0.7
micoeukaryotes C.elegans, mixed culture-2 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.9
nitrogen source D-2-Aminobutyric (N) +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.1
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PP_0925