Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_0893
carbon source butyrate (C) -4.5
pH Growth at pH6 and (C) Trisodium citrate -4.2
nitrogen source 2,6-diaminopimelic (N) -3.3
temperature Growth at 25C -2.4
phage P. putida Sci small MOI 0.1 -2.4
carbon source acetate (C) -2.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.8
carbon source 2,3-Butanediol (C) -1.7
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -1.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.7
phage P. putida Missley MOI 0.1 -1.6
pH pH 5 -1.6
carbon source carbon source 4-vinylphenol 0.1 mM -1.5
carbon source Ethyl decanoate and D-Glucose (C)s -1.4
carbon source ferulate (C); with MOPS -1.3
carbon source 3-methyl-1-butanol 0.25 vol% (C) -1.3
phage P. putida Sci small MOI 0.1 -1.3
nitrogen source Urea (N); with MOPS -1.2
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -1.2
nitrogen source Ammonium chloride (N) -1.2
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. -1.2
carbon source carbon source 2-Deoxy-D-glucose 10 mM -1.1
carbon source Nonanoic (C) -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.1
pH pH 9 -1.1
carbon source carbon source Bisabolol 45 mM -1.1
temperature Growth at 30C -1.0
carbon source Valeric (C) +1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.8
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PP_0893