Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_0881
carbon source	L-Isoleucine (C)	-2.5
carbon source	L-Isoleucine (C)	-2.1
carbon source	L-Alanine (C)	-1.9
carbon source	L-Leucine (C)	-1.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.8
pH	pH 4	-1.7
nitrogen source	D-2-Aminobutyric (N)	-1.6
carbon source	Vanillic Acid (C)	-1.3
carbon source	L-Lysine (C)	-1.3
carbon source	L-Lysine 10 mM (C)	-1.3
carbon source	Vanillin (C)	-1.2
carbon source	Vanillin (C)	-1.1
carbon source	L-Leucine (C)	-1.1
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-1.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.1
carbon source	ferulate (C); with MOPS	-1.1
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-1.1
carbon source	3-methyl-1-butanol (C)	-1.1
pH	pH 9	-1.1
phage	P. putida Sci small MOI 0.1	-1.1
carbon source	Vanillin (C)	-1.1
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM	-1.0
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	-1.0
nitrogen source	nitrogen source Ammonium chloride 20mM	-1.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0
pH	pH 7	-1.0
carbon source	Hexanoic (C)	+1.1
carbon source	Delta-Nonalactone (C)	+1.2
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+1.3
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+1.7
		remove PP_0881