Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_0861
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3
anaerobic m9	anaerobic M9	-0.2
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	-0.2
supernatant	Supernatant; Paenibacillus sp. UNCCL52 spent media 0.5x and Ferric chloride 1 uM	-0.2
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.2
pH	Growth at pH9 and (C) Trisodium citrate	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2
r2a control with 0.2% methanol	R2A control with 0.2% methanol	+0.2
pH	Growth at pH7 and (C) Trisodium citrate	+0.2
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.2
carbon source	L-Phenylalanine 5 mM (C)	+0.2
carbon source	ferulate (C); with MOPS	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.2
pH	Growth at pH8 and (C) D-Glucose	+0.2
carbon source	ferulate (C); with MOPS	+0.2
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.2
temperature shift	Temperature shift 30_to_10	+0.2
stress	Butanol 0.6 vol%	+0.2
pH	Growth at pH6 and (C) Trisodium citrate	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.2
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+0.2
carbon source	Nonanoic (C)	+0.3
carbon source	D-Glucose (C)	+0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
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