Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0860
nitrogen source	2,6-diaminopimelic (N)	-0.7
pH	Growth at pH7 and (C) D-Glucose	-0.5
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.5
nitrogen source	D-2-Aminobutyric (N)	-0.5
pH	pH 8	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.4
nitrogen source	Urea (N)	-0.4
pH	Growth at pH8 and (C) D-Glucose	-0.4
carbon source	DL-3-Hydroxybutyric (C)	-0.4
phage	PUT8 MOI 0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4
temperature	Growth at 30C; with MOPS	-0.4
pH	Growth at pH6 and (C) D-Glucose	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.4
carbon source	2-Methylbutanoic (C)	-0.4
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.4
phage	PUT8 MOI 10	-0.4
pH	Growth at pH6 and (C) D-Glucose	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.4
carbon source	Myristic (C)	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.5
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.5
phage	P. putida Sci small MOI 0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6
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