Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_0840
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1
temperature shift	Temperature shift 30_to_25; with MOPS	-1.0
stress	R2A with Fusaric 120 ug/mL	-0.9
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-0.9
carbon source	L-Leucine (C)	-0.8
pH	pH 9	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.7
nitrogen source	Cytosine (N)	-0.7
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.7
carbon source	Rhamnogalacturonan - from potato (C)	-0.7
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	-0.7
carbon source	D-Glucose (C)	-0.6
temperature shift	Temperature shift 10_to_25; with MOPS	+0.7
carbon source	D-Glucose (C)	+0.7
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	+0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7
phage	PUT 8 MOI 1	+0.7
pH	Growth at pH7 and (C) D-Glucose	+0.7
nitrogen source	Urea (N); with MOPS	+0.8
carbon source	4-Aminobutyric 10 mM (C)	+0.8
nitrogen source	Propandiamine (N)	+0.8
nitrogen source	NAG (N); with MOPS	+0.9
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.9
temperature shift	Temperature shift 30_to_21; with MOPS	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1
nitrogen source	2,6-diaminopimelic (N)	+1.1
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