Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0801
pH	Growth at pH7 and (C) D-Glucose	-5.1
pH	Growth at pH7 and (C) Trisodium citrate	-4.9
carbon source	ferulate (C); with MOPS	-4.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-4.2
phage	P. putida South MOI 10	-4.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-4.0
nitrogen source	2,6-diaminopimelic (N)	-3.6
temperature shift	Temperature shift 30_to_25	-3.5
pH	Growth at pH9 and (C) Trisodium citrate	-3.4
phage	P. putida South MOI 10	-3.4
nitrogen source	Imidazole (N)	-3.1
stress	Growth with Chloride 200 mM	-3.0
no stress control	Growth with no stress	-2.8
stress	R2A with Fusaric 120 ug/mL	-2.8
carbon source	butyrate (C)	-2.4
nitrogen source	Ammonium chloride (N); with MOPS	-2.3
carbon source	L-Proline (C)	-2.2
carbon source	Acetate Carbon Source (5mM)	-2.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.1
carbon source	butyrate (C)	-2.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.0
carbon source	D-Glucose (C)	-1.9
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.9
nitrogen source	Urea (N)	-1.9
carbon source	Glutaric (C)	-1.9
carbon source	D-Lysine 10 mM (C)	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-1.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+4.2
		remove PP_0801