Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_0777
carbon source Tween 20 (C) -1.2
carbon source Valeric (C) -0.9
nitrogen source NAG (N); with MOPS -0.8
pH Growth at pH9 and (C) Trisodium citrate -0.7
stress R2A with Fusaric 480 ug/mL -0.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.6
temperature shift Temperature shift 30_to_21; with MOPS -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.6
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.6
carbon source D-Lysine 10 mM (C) -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5
carbon source Phenylacetic (C) -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5
carbon source D-Glucaric (C) -0.5
carbon source Valerolactone (C) +0.5
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.5
no stress control Growth with no stress +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.6
carbon source carbon source D-Glucose 55.5 mM +0.6
temperature shift Temperature shift 30_to_21; with MOPS +0.6
nitrogen source D-2-Aminobutyric (N) +0.6
nitrogen source D-2-Aminobutyric (N) +0.6
temperature Growth at 30C; with MOPS +0.7
carbon source ferulate (C); with MOPS +0.7
pH Growth at pH6 and (C) D-Glucose +0.8
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PP_0777