Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0762
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	-0.9
pH	pH 7	-0.7
pH	Valerolactone (C) pH 6.5	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.7
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.6
nitrogen source	DL-2-Aminobutyric (N)	-0.6
carbon source	Crotonic (C)	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
nitrogen source	no extra (N)	+0.6
pH	Growth at pH8 and (C) D-Glucose	+0.6
carbon source	Delta-Undecalactone (C)	+0.6
temperature shift	Temperature shift 30_to_4	+0.6
pH	Growth at pH6 and (C) Trisodium citrate	+0.6
temperature shift	Temperature shift 10_to_34; with MOPS	+0.6
temperature	Growth at 25C	+0.6
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.7
phage	P. putida Missley MOI 0.1	+0.7
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	+0.7
pH	Growth at pH7 and (C) Trisodium citrate	+0.7
stress	Growth with Chloride 500 mM; with MOPS	+0.7
carbon source	ferulate (C); with MOPS	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7
stress	Growth with Chloride 500 mM; with MOPS	+0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8
no stress control	Growth with no stress	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0
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