Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0705
pH	Growth at pH7 and (C) Trisodium citrate	-1.4
pH	Growth at pH6 and (C) Trisodium citrate	-1.1
nitrogen source	Urea (N)	-1.0
nitrogen source	2,6-diaminopimelic (N)	-0.9
phage	P. putida Sci Big MOI 0.1	-0.8
carbon source	D-Glucose (C); with MOPS	-0.8
no stress control	Growth with no stress	-0.8
carbon source	Ethyl decanoate (C)	-0.7
pH	Growth at pH8 and (C) Trisodium citrate	-0.7
nitrogen source	nitrogen source nitrite 1mM	-0.7
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7
pH	Growth at pH6 and (C) Trisodium citrate	-0.7
pH	Growth at pH7 and (C) D-Glucose	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.7
phage	P. putida Sci small MOI 0.1	-0.7
nitrogen source	2,6-diaminopimelic (N)	-0.6
temperature	Growth at 25C	-0.6
no stress control	Growth with no stress	-0.6
carbon source	Ethyl decanoate (C)	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.6
nitrogen source	D-2-Aminobutyric (N)	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.8
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	+0.8
carbon source	carbon source 4-vinylphenol 0.1 mM	+0.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.8
pH	pH 6	+1.0
		remove PP_0705