Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0668
pH	Growth at pH6 and (C) D-Glucose	-2.2
nitrogen source	Urea (N); with MOPS	-1.5
phage	P. putida Sci small MOI 0.1	-1.3
pH	Growth at pH8 and (C) Trisodium citrate	-1.1
no stress control	Growth with no stress	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	-0.9
carbon source	D-Glucose (C)	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.8
stress	Growth with Chloride 500 mM; with MOPS	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.8
temperature shift	Temperature shift 30_to_25; with MOPS	-0.8
carbon source	Crotonic (C)	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.7
pH	Growth at pH6 and (C) D-Glucose	-0.6
pH	Growth at pH8 and (C) Trisodium citrate	-0.6
nitrogen source	Propiolactam (N)	-0.6
phage	P. put South MOI 10	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.6
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6
carbon source	ferulate (C); with MOPS	-0.6
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.6
stress	R2A with Fusaric 480 ug/mL	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.6
carbon source	4-Hydroxyvalerate (C) (40mM)	-0.6
temperature	Growth at 30C	+0.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	+0.6
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