Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0665
phage	P. putida Sci Big MOI 0.1	-0.8
pH	Growth at pH7 and (C) D-Glucose	-0.7
pH	Growth at pH6 and (C) D-Glucose	-0.7
nitrogen source	Urea (N); with MOPS	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5
pH	D-Glucose (C) pH 7	-0.5
carbon source	1,3-Hexanediol (C)	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.4
phage	P. putida Sci small MOI 0.1	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4
carbon source	D-Glucose (C)	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4
stress	MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL	-0.4
nitrogen source	Ammonium chloride (N)	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.4
carbon source	D-Glucose (C)	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
carbon source	Valeric (C)	-0.3
phage	P. putida Missley MOI 0.1	-0.3
phage	PUT8 MOI 10	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.3
pH	pH 5	-0.3
no phage control	Time6-nophage	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	+0.4
carbon source	acetate (C)	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9
		remove PP_0665