Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_0658
carbon source	Valeric (C)	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.4
phage	P. putida Sci small MOI 0.1	-0.4
stress	Growth with Chloride 200 mM	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.4
temperature shift	Temperature shift 10_to_30	-0.4
micoeukaryotes	C.elegans, mixed culture-2	-0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.4
stress	R2A with Fusaric 240 ug/mL	-0.3
nitrogen source	Hippuric (N)	-0.3
nitrogen source	2,6-diaminopimelic (N)	-0.3
stress	2-Piperidinone 3 vol%	-0.3
temperature shift	Temperature shift 10_to_25	+0.4
temperature shift	Temperature shift 30_to_21; with MOPS	+0.4
pH	Growth at pH7 and (C) D-Glucose	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4
pH	Growth at pH8 and (C) D-Glucose	+0.4
nitrogen source	nitrogen source nitrite 0.5mM	+0.4
nitrogen source	Ammonium chloride and TNT (N)	+0.4
temperature shift	Temperature shift 30_to_25; with MOPS	+0.4
carbon source	ferulate (C); with MOPS	+0.4
nitrogen source	D-2-Aminobutyric (N)	+0.4
temperature shift	Temperature shift 30_to_34; with MOPS	+0.4
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8
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