Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0630
phage	P. putida Sci small MOI 0.1	-5.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-5.2
phage	PUT 8 MOI 1	-5.2
stress	Growth with Chloride 500 mM; with MOPS	-5.1
temperature	Growth at 25C; with MOPS	-5.1
phage	P. putida Missley MOI 0.1	-5.1
temperature shift	Temperature shift 10_to_25; with MOPS	-5.0
nitrogen source	nitrate (N)	-4.9
carbon source	D-Glucose (C)	-4.9
temperature shift	Temperature shift 30_to_21; with MOPS	-4.9
phage	P. putida Sci small MOI 0.1	-4.9
pH	Growth at pH6 and (C) Trisodium citrate	-4.7
carbon source	Valeric (C)	-4.6
phage	P. putida PUT 7 MOI 1	-4.3
carbon source	butyrate (C)	-4.1
no phage control	Time6-nophage	-3.9
temperature shift	Temperature shift 10_to_21; with MOPS	-3.4
temperature shift	Temperature shift 30_to_34; with MOPS	-3.4
carbon source	2,3-Butanediol (C)	-3.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-3.3
carbon source	rac-3-Hydroxypentanoic Acid (C)	-3.3
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-3.2
phage	P. putida South MOI 10	-3.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-2.9
no stress control	Growth with no stress	-2.7
nitrogen source	Imidazole (N)	-2.7
carbon source	DL-3-Hydroxyisobutyric (C)	-2.5
carbon source	carbon source 3-O-methyl-glucose 50 mM	+2.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+3.5
		remove PP_0630