Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_0614
nitrogen source D-2-Aminobutyric (N) -1.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.3
phage P. putida Sci Big MOI 0.1 -1.1
nitrogen source D-2-Aminobutyric (N) -1.0
carbon source carbon source D-Glucose 55.5 mM -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.9
carbon source D-Glucose (C) -0.9
pH Growth at pH8 and (C) D-Glucose -0.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9
temperature shift Temperature shift 30_to_25 -0.9
carbon source carbon source 2-Deoxy-D-glucose 50 mM -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8
nitrogen source 2,6-diaminopimelic (N) -0.8
stress R2A with Polymyxin B sulfate 0.001 mg/ml -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.7
pH Growth at pH6 and (C) D-Glucose -0.7
phage P. putida PUT 7 MOI 1 -0.7
nitrogen source Urea (N) -0.7
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.7
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6
phage P. put PUT 10 MOI 10 +0.7
carbon source D-Glucose (C) with 20AA_mix_minus_Cys +0.7
pH Growth at pH7 and (C) D-Glucose +0.7
pH Growth at pH6 and (C) Trisodium citrate +0.8
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. +0.8
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PP_0614