Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0613
temperature shift	Temperature shift 10_to_30; with MOPS	-0.6
pH	Growth at pH9 and (C) Trisodium citrate	-0.6
carbon source	4-Methyl-2-oxopentanoic (C)	-0.6
pH	Growth at pH7 and (C) Trisodium citrate	-0.6
carbon source	5-Hydroxydodecanoate (C)	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.5
nitrogen source	no extra (N); with MOPS	-0.5
carbon source	ferulate (C); with MOPS	-0.5
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	-0.5
carbon source	D-Glucose (C)	-0.5
temperature shift	Temperature shift 10_to_25; with MOPS	-0.5
dilutelb	LB 0.1x with 55.5 mM D-Glucose	-0.4
temperature	Growth at 30C; with MOPS	-0.4
temperature shift	Temperature shift 10_to_34; with MOPS	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4
phage	P. putida PUT 7 MOI 1	-0.4
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
carbon source	D-Glucose (C) 10 mM	-0.4
carbon source	acetate (C)	-0.4
carbon source	BC Lignin Sorghum 10 vol% (C)	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.4
carbon source	Valeric (C)	+0.4
nitrogen source	D-2-Aminobutyric (N)	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
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