Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0582
pH	Growth at pH6 and (C) D-Glucose	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.4
temperature shift	Temperature shift 10_to_25; with MOPS	-0.4
phage	P. putida Missley MOI 0.1	-0.4
carbon source	3-Hydroxydecanoic (C)	-0.4
nitrogen source	2,6-diaminopimelic (N)	-0.4
temperature shift	Temperature shift 10_to_30; with MOPS	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3
temperature shift	Temperature shift 30_to_21	-0.3
phage	P. putida Sci Big MOI 0.1	-0.3
pH	Growth at pH7 and (C) Trisodium citrate	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3
pH	D-Glucose (C) pH 6	-0.3
carbon source	L-Lysine (C)	+0.3
carbon source	carbon source D-Glucose 55.5 mM	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3
carbon source	carbon source 4-vinylphenol 0.01 mM	+0.3
pH	Growth at pH8 and (C) Trisodium citrate	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4
phage	P. putida South MOI 10	+0.4
carbon source	butyrate (C)	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.4
carbon source	ferulate (C); with MOPS	+0.4
carbon source	ferulate (C); with MOPS	+0.4
carbon source	Tween 20 (C)	+0.4
carbon source	acetate (C)	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.6
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