Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0581
nitrogen source	Propandiamine (N)	-0.7
carbon source	Valerolactone (C)	-0.6
phage	P. putida Sci Big MOI 0.1	-0.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-0.4
pH	Valerolactone (C) pH 6.5	-0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4
nitrogen source	Propandiamine (N)	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3
carbon source	L-Proline (C)	-0.3
nitrogen source	2,6-diaminopimelic (N)	-0.3
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.3
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.3
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-0.3
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-0.3
carbon source	L-Lysine 10 mM (C)	-0.3
nitrogen source	Urea (N)	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3
stress	Cholinium glutamate 10 vol%	+0.3
pH	Growth at pH6 and (C) Trisodium citrate	+0.3
stress	R2A with Fusaric 480 ug/mL	+0.3
phage	P. putida Sci small MOI 0.1	+0.3
nitrogen source	D-2-Aminobutyric (N)	+0.3
pH	Growth at pH9 and (C) D-Glucose	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
carbon source	Trisodium citrate (C)	+0.3
carbon source	DL-3-Hydroxybutyric (C)	+0.3
phage	P. putida South MOI 10	+0.4
pH	Growth at pH6 and (C) Trisodium citrate	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
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