Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0578
phage	P. putida Sci Big MOI 0.1	-0.9
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7
phage	PUT8 MOI 0.1	-0.6
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6
carbon source	3-Hydroxydecanoic (C)	-0.6
nitrogen source	Propandiamine (N)	-0.6
nitrogen source	nitrogen source nitrite 0.5mM	-0.5
temperature shift	Temperature shift 30_to_25	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5
temperature	Growth at 25C; with MOPS	-0.5
nitrogen source	D-2-Aminobutyric (N)	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
nitrogen source	nitrogen source nitrite 0.5mM	-0.5
carbon source	Valerolactone (C)	-0.5
pH	Growth at pH8 and (C) D-Glucose	-0.5
phage	PUT 8 MOI 1	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.4
stress	R2A with Fusaric 120 ug/mL	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4
stress	Growth with Chloride 500 mM; with MOPS	-0.4
phage	PUT8 MOI 0.1	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4
carbon source	D-Glucose (C)	+0.5
micoeukaryotes	C.elegans, mixed culture-2	+0.5
pH	Growth at pH6 and (C) D-Glucose	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.6
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