Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0555
carbon source	2,3-Butanediol (C)	-3.8
carbon source	2,3-Butanediol (C)	-2.6
carbon source	carbon source D-Glucose 55.5 mM	-1.1
pH	Growth at pH7 and (C) D-Glucose	-1.0
carbon source	ferulate (C); with MOPS	-0.8
carbon source	ferulate (C); with MOPS	-0.8
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.8
carbon source	D-Glucose (C)	-0.7
nitrogen source	nitrate (N)	-0.6
pH	Growth at pH6 and (C) D-Glucose	-0.6
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.6
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.6
pH	Growth at pH8 and (C) D-Glucose	-0.6
temperature	Growth at 10C; with MOPS	-0.5
temperature shift	Temperature shift 30_to_21; with MOPS	-0.5
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.5
supernatant	Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x	-0.5
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.5
temperature shift	Temperature shift 10_to_30	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
nitrogen source	nitrogen source nitrate 5mM	-0.5
carbon source	D-Glucose (C) 10 mM	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.5
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5
phage	P. putida Sci Big MOI 0.1	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.7
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