Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0550
nitrogen source	Propandiamine (N)	-2.0
nitrogen source	2,6-diaminopimelic (N)	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2
stress	Growth with Chloride 500 mM; with MOPS	-1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.1
temperature shift	Temperature shift 30_to_34; with MOPS	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.0
pH	Growth at pH9 and (C) Trisodium citrate	-1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9
temperature shift	Temperature shift 30_to_4; with MOPS	-0.9
pH	Growth at pH6 and (C) Trisodium citrate	-0.9
nitrogen source	Urea (N); with MOPS	-0.9
pH	Growth at pH6 and (C) Trisodium citrate	-0.9
temperature	Growth at 30C	-0.8
nitrogen source	Urea (N)	-0.8
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.8
carbon source	D-Glucose (C) with 20AA_mix_minus_Tyr	-0.8
temperature shift	Temperature shift 10_to_30; with MOPS	-0.8
pH	pH 4	-0.8
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.8
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM	-0.8
temperature shift	Temperature shift 30_to_4	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8
phage	P. putida Sci small MOI 0.1	+0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+1.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0
carbon source	ferulate (C); with MOPS	+1.2
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